PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03949g02007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 340aa MW: 38817.1 Da PI: 8.0468

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03949g02007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.7	1.1e-53	8	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePwdL++k+k ++ewyfFs++d+ky+tg+r+nrat++g+ Niben101Scf03949g02007.1 8 VPPGFRFHPTDEELLHYYLKKKISFQKFDM-EVIREVDLNKIEPWDLQEKCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGF 91 69**************************.99**********964444222455********************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Niben101Scf03949g02007.1 92 WKATGRDKCIRN-SFKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 137 *******9.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-60	5	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.252	8	159	IPR003441	NAC domain
Pfam	PF02365	6.3E-28	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MATSSGGVPP GFRFHPTDEE LLHYYLKKKI SFQKFDMEVI REVDLNKIEP WDLQEKCKIG 60 STPQNEWYFF SHKDRKYPTG SRTNRATNAG FWKATGRDKC IRNSFKKIGM RKTLVFYRGR 120 APHGQKTDWI MHEYRLEDAD DPQGNQSDDG WVICRVFKKK HLFKVGNEGS GAASSDQLNS 180 TSSHQSRAFN TQYLLQQQQQ QGGHGLNYSH IPLALPQYNS HLQLQPQNFI PNKPLGYHDF 240 SALPTSDHQA PLMVKQLMSS ADSGYSEQNL PYQQEVGSSC DHQNLNEWKM IASSHGQLGQ 300 EDDDSAKNAG VRFDDANASS MSQINQLSHR GEMDFWGYTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	8	160	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	8	160	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-53	8	160	17	166	NAC domain-containing protein 19
4dul_B	1e-53	8	160	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602081.1	0.0	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-130	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A1S3X3A6	0.0	A0A1S3X3A6_TOBAC; protein BEARSKIN2-like
STRING	XP_009602081.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-130	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]