PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03951g02012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 147aa    MW: 16186.5 Da    PI: 6.7636
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03951g02012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.99.1e-305101196
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                               +C aCk+lrrkC+k+C++apyf  eq +++fa+vhk+FGasn +kll ++p ++r +++ +l+yeA ar+rdPv    + +  +q
  Niben101Scf03951g02012.1   5 PCGACKYLRRKCVKGCIFAPYFDTEQgMSHFAAVHKVFGASNASKLLLSIPANKRLETVITLCYEALARVRDPVLTLQEELAYVQ 89 
                               7**********************99988**********************************************99999999888 PP

                    DUF260  85 qqleqlkaelal 96 
                                 l++l++  ++
  Niben101Scf03951g02012.1  90 ASLSTLQSASSE 101
                               888888876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.2694109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-28599IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSSGPCGACK YLRRKCVKGC IFAPYFDTEQ GMSHFAAVHK VFGASNASKL LLSIPANKRL  60
ETVITLCYEA LARVRDPVLT LQEELAYVQA SLSTLQSASS ELAATYSNIS SVCMDPLFDT  120
TVLHHVLDQQ LENCDLHSVA RDFDSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-2721098111LOB family transfactor Ramosa2.1
5ly0_B5e-2721098111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604914.11e-94PREDICTED: LOB domain-containing protein 19-like
SwissprotO813228e-44LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1S4DMH31e-92A0A1S4DMH3_TOBAC; LOB domain-containing protein 19-like
STRINGXP_009604914.14e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-41LOB domain-containing protein 31