PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03962g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 518aa    MW: 56720.4 Da    PI: 7.5465
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03962g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.41.9e-25197253259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +DgynWrKYGqK+vk  + +rsYYrCt+++C++kk +e+s+++++v+ei+Y+++Hnh+
  Niben101Scf03962g01005.1 197 RDGYNWRKYGQKQVKIPQGSRSYYRCTHSECCAKK-IECSDHNNRVMEIIYRSQHNHD 253
                               7********************************98.*********************7 PP
2WRKY97.49.3e-31380437259
                               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+ + ++ ++itY+g H+h+
  Niben101Scf03962g01005.1 380 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAVDSTSPLIITYKGVHDHD 437
                               7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-22193255IPR003657WRKY domain
SuperFamilySSF1182901.57E-19194255IPR003657WRKY domain
SMARTSM007746.1E-24196254IPR003657WRKY domain
PfamPF031061.4E-17198253IPR003657WRKY domain
PROSITE profilePS5081118.521198255IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.0E-32364439IPR003657WRKY domain
SuperFamilySSF1182903.92E-27373439IPR003657WRKY domain
PROSITE profilePS5081132.053374439IPR003657WRKY domain
SMARTSM007742.0E-35379438IPR003657WRKY domain
PfamPF031065.9E-24381436IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MNGENESSKA GGAENSNPEE NKNENSSVHD SGVLDDGGGE RKENGIEGLQ EPKVVISFSE  60
TLASATVHSS VQKIGSDVQS KFDTDSSSSH QLSEVPVEYA LPPFESAKEI RDKTSVTRPE  120
TLSAQVQTEH QQRMPDEASS LELSPTSVRP SISSVSRPTL AERHLSAVVN GSTGEVAKQS  180
SDAKVLPIVP VLKTPSRDGY NWRKYGQKQV KIPQGSRSYY RCTHSECCAK KIECSDHNNR  240
VMEIIYRSQH NHDPPPRVNP PPRVNCSKGS KPVVLPAPAN DDRMIACPNR SFNETVPSSL  300
KENLQETSPI AEKANQDSCG YDTDTEITIN EEHSDEPEQK KRQVLSCMLK KSDASSESVP  360
RPGKKPKFVV HAACDVGISS DGYRWRKYGQ KMVKGNPHPR NYYRCTSAGC PVRKHIERAV  420
DSTSPLIITY KGVHDHDMPV PKKRQSPPSA PLIAAAAPAS LTSLQANKPE LLQHQKLTTQ  480
WSVDKEGALT GEKLDLGGEK AMESARTLLS IGFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-27367439274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009624879.10.0PREDICTED: probable WRKY transcription factor 32
SwissprotP595831e-111WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A1S4AQ120.0A0A1S4AQ12_TOBAC; probable WRKY transcription factor 32
STRINGXP_009624879.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-97WRKY DNA-binding protein 32