PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03969g05020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 96aa MW: 10542.8 Da PI: 6.4989

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03969g05020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.1	2.4e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++e Niben101Scf03969g05020.1 1 MVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLAMAQAE 40 69*********************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	5.9E-11	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.57	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMAQAE VVHLRLRQSA GITNSPTNSG 60 SPSSHIMGSH QPKGFFHMDL DVDQSNNGFN EPVWPC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609750.1	6e-66	PREDICTED: LOB domain-containing protein 4-like
Refseq	XP_019246176.1	2e-65	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-19	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1J6IHI2	4e-64	A0A1J6IHI2_NICAT; Lob domain-containing protein 4
STRING	XP_009783465.1	1e-64	(Nicotiana sylvestris)
STRING	XP_009609750.1	2e-65	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	7e-21	LOB domain-containing protein 4