PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03971g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 75aa    MW: 8489.58 Da    PI: 8.2446
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03971g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05931123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              ++Cp C+++F++   L  H r+H
  Niben101Scf03971g00013.1  9 HECPFCNRMFKSGQALGGHKRSH 31
                              79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.07E-6733No hitNo description
PROSITE profilePS501579.452931IPR007087Zinc finger, C2H2
PfamPF139123.7E-10931IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 75 aa     Download sequence    Send to blast
MKAKKFKGHE CPFCNRMFKS GQALGGHKRS HFLTGTQENQ YQTSAFKREV VDLLDLNLPA  60
PVDDVNDESA FVSSW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791314.13e-39PREDICTED: uncharacterized protein LOC104238609
RefseqXP_016485576.13e-39PREDICTED: uncharacterized protein LOC107805973
TrEMBLA0A1S4B9K27e-38A0A1S4B9K2_TOBAC; uncharacterized protein LOC107805973
TrEMBLA0A1U7XWK27e-38A0A1U7XWK2_NICSY; uncharacterized protein LOC104238609
STRINGXP_009791314.11e-38(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-20C2H2-like zinc finger protein