PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03978g09014.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 159aa    MW: 17705.3 Da    PI: 5.3135
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03978g09014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.84.1e-10109156249
                       NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk 49 
                               p  frF+Ptdeel+v+yL +k+ + +l++  +i+e+ d++ + P+d+p+
  Niben101Scf03978g09014.1 109 PIKFRFRPTDEELLVHYLSRKIFSMPLPAL-IIPEMlDVFGSFPSDMPE 156
                               677*************************95.577776*********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530988.34E-61068IPR012337Ribonuclease H-like domain
PfamPF056991.9E-82170IPR008906HAT, C-terminal dimerisation domain
SuperFamilySSF1019414.05E-12104157IPR003441NAC domain
PROSITE profilePS5100516.14108159IPR003441NAC domain
PfamPF023654.0E-5110131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDEFDLSESQ PESSSQKTKI ELYLEYPVLA RKGNENVDVL KFWKDKMNRY HKLSVIAGDG  60
LSIPISTVVS SALEGEYGGV QAAVSQGKPT VSKEGAKPAE GTIRSLNLPI KFRFRPTDEE  120
LLVHYLSRKI FSMPLPALII PEMLDVFGSF PSDMPEKLT
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132501318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-13NAC domain containing protein 83