PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03985g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 359aa    MW: 39278.5 Da    PI: 4.893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03985g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19146196155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  Niben101Scf03985g01005.1 146 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDHAAIQLRG 196
                               59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.85E-32146204No hitNo description
SuperFamilySSF541712.22E-21147204IPR016177DNA-binding domain
PROSITE profilePS5103223.63147204IPR001471AP2/ERF domain
SMARTSM003805.0E-37147210IPR001471AP2/ERF domain
PfamPF008474.9E-12147196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-30147204IPR001471AP2/ERF domain
PRINTSPR003674.0E-10148159IPR001471AP2/ERF domain
PRINTSPR003674.0E-10170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDQQTMLSSI VKYTEHRKQT TMVKPSVPAT VTGRRKCPEM NAANVGPRVV RITVTDADAT  60
DSSSDEGEGH YGRHRVKKFV NEVRIEPLIG ETVKSGGSSN GNGSVSGVLR NGSSETAVAA  120
KRRKKNAGAT KAEVTAARGL KANNVKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA  180
EEAAMVYDHA AIQLRGPDAL TNFASPPTAK TTSCSSGYNS GEESHNDQLS PKSVLRCDST  240
SFEESQNNEE AEAESLPSLI SESAHKNSDF RDEIDISNFC EFPPFESLFP DNLFLFENPV  300
PIPDLFEPAA LSDNIFGETC SDMFIGSSND FGFGSSSWPE DDYFQDIGDI FGSDPLMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20146203159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452918.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A1S3YLI40.0A0A1S3YLI4_TOBAC; ethylene-responsive transcription factor CRF2-like
STRINGXP_009763317.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.28e-48cytokinin response factor 2