PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04000g01027.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 227aa MW: 25638.7 Da PI: 6.282

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04000g01027.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	49	107	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gC++kk+vers++d ++++itY+++Hnh+ Niben101Scf04000g01027.1 49 SDCWSWRKYGQKPIKGSPYPRGYYKCSSSkGCSAKKQVERSSTDSSLFIITYTSTHNHP 107 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.1E-31	41	109	IPR003657	WRKY domain
PROSITE profile	PS50811	31.25	43	109	IPR003657	WRKY domain
SuperFamily	SSF118290	1.18E-25	46	109	IPR003657	WRKY domain
SMART	SM00774	5.4E-35	48	108	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	50	107	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGKSRPSKTS RLVEQELVAT KKRKVAQKVV ITVQMEANGI KQKNEGAPSD CWSWRKYGQK 60 PIKGSPYPRG YYKCSSSKGC SAKKQVERSS TDSSLFIITY TSTHNHPGPN LPNKDSPLNP 120 ATQDSFMTLQ QDQEPITDRH VSLENNDSIS QRILVQQEEN QFTPKFLGTI SYDDFLPLSY 180 PQLMNFPKSE SPEENDFYDE LGELQLPPSF TSFAGIFEEA ILVDPSY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-21	50	110	18	80	Disease resistance protein RRS1
5w3x_D	3e-21	50	110	18	80	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019246677.1	1e-147	PREDICTED: probable WRKY transcription factor 14 isoform X1
TrEMBL	A0A1J6J5T5	1e-146	A0A1J6J5T5_NICAT; Putative wrky transcription factor 35
STRING	XP_009772110.1	1e-144	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-22	WRKY DNA-binding protein 35