PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04000g01030.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 923aa MW: 104954 Da PI: 5.2167

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04000g01030.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	236.8	9.7e-73	452	758	34	347
GRAS 34 dgdpmqRlaayfteALaarlarsvselykal.ppsetsekn.....sseelaalklfsevsPilkfshltaNqaIleavegeerv 112 +++p+qRl +y+++AL++r+ r ++ y + ++ + s + +a+ + +++ P+ ++ +++ q+Ile v +++++ Niben101Scf04000g01030.1 452 SRNPVQRLSFYIAKALEERIDR-ATGRYTCTdEDRHL---KyiksmASGTNSAFLICHQLLPFSQVMQFAGVQTILENVRSAKKI 532 569*****************.33333222122222...122333455556666799*********************** PP GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 H iDf+i G+QW ++qaLa+++ + l+iT+vgs ++ke+ e tg+ L++fA++lg++f+f+++v ++++d++ e+ +++ Niben101Scf04000g01030.1 533 HLIDFNIRSGIQWTVMMQALAEKS-EIELLKITAVGS---TEKEKFEVTGNTLHSFATSLGLSFSFDIVVLSDMKDFKKESVNIE 613 ******************95.569*****...579************************************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +E+laV + l ++ ++ le+ ++k+v+s+ P+v+v+ e ea+hns+sFl+rf+e+l +y +fd++e + r+s r Niben101Scf04000g01030.1 614 ADETLAVYCNTVLRTMIPKPDYLEN----LMKVVRSIGPTVIVIGEVEANHNSPSFLNRFIETLFFYGGFFDCFEDCMDRDSPCR 694 ************977777777....**************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 +++E ++g+ i+n+va+eg+er+ r+ +le Wr+ ++++G+ + ++se+a qa+l+l++++ + Niben101Scf04000g01030.1 695 RTIEGLYFGEGIRNIVAAEGKERFTRNVKLEVWRAFFSRFGMVEEEFSESAWYQANLILKQFA-Q 758 **********************************************************998.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.64	381	766	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-70	452	758	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 923 aa Download sequence Send to blast
MGSSSEKWQG KKSLVSLMDC AANLLREPFQ FFTTILLSLL FPLSFLILSR LSIAHYLIDL 60 LGYSTEETDS DLLIKFFLHA NPTFLHILVS LVSVAALTHS LMGGTSCFIR RTAEPVSRPR 120 LYTAWIFLCI LQICVGLGIE DGHDLGDKRG FLARAIFFLG LHETMFFWSK TVVKPVVDDT 180 VFGVARENRL AEKAALAMSF GGLWWWRLRG EVESLVVVVE KKRDLLINIG LVDFVGWWLY 240 YLTVTIGLIK VVKSLIWVVY VMFGRRVVDT DNARDSVRND EKQICPGIGT MANVSNDNFT 300 GDHFRNELVV EDPWFEVELE DCADIDSVYS MCNEENTSNE QVTTNLFQDQ QQSISNWMQS 360 RFSTNTHQIQ SSIEQPKNDD FQPQVLQLIG NSTNEKSIPF SLASFELLNN YGRLIKKSSE 420 ENLSINNALS CETRASEEVN NQQFHLARKL TSRNPVQRLS FYIAKALEER IDRATGRYTC 480 TDEDRHLKYI KSMASGTNSA FLICHQLLPF SQVMQFAGVQ TILENVRSAK KIHLIDFNIR 540 SGIQWTVMMQ ALAEKSEIEL LKITAVGSTE KEKFEVTGNT LHSFATSLGL SFSFDIVVLS 600 DMKDFKKESV NIEADETLAV YCNTVLRTMI PKPDYLENLM KVVRSIGPTV IVIGEVEANH 660 NSPSFLNRFI ETLFFYGGFF DCFEDCMDRD SPCRRTIEGL YFGEGIRNIV AAEGKERFTR 720 NVKLEVWRAF FSRFGMVEEE FSESAWYQAN LILKQFAQGI MEDSADIQNF YTNYGFYQEY 780 AVNPQVQEMN KQQEEMNVYA VTPHVQTGSH VDKTPFLSLA PFELLRNNPS RCKNTEGDKV 840 RDMDNTTNAY QKLSAMQIMR LAGERFIQFS SNKSININNL LHPYGSALSN LSQEDNQDVE 900 LAQILLAAAE KVLTNNMTAQ GKC

Sequence ? help Back to Top

Protein Sequence Length: 923 aa Download sequence Send to blast

MGSSSEKWQG KKSLVSLMDC AANLLREPFQ FFTTILLSLL FPLSFLILSR LSIAHYLIDL  60
LGYSTEETDS DLLIKFFLHA NPTFLHILVS LVSVAALTHS LMGGTSCFIR RTAEPVSRPR  120
LYTAWIFLCI LQICVGLGIE DGHDLGDKRG FLARAIFFLG LHETMFFWSK TVVKPVVDDT  180
VFGVARENRL AEKAALAMSF GGLWWWRLRG EVESLVVVVE KKRDLLINIG LVDFVGWWLY  240
YLTVTIGLIK VVKSLIWVVY VMFGRRVVDT DNARDSVRND EKQICPGIGT MANVSNDNFT  300
GDHFRNELVV EDPWFEVELE DCADIDSVYS MCNEENTSNE QVTTNLFQDQ QQSISNWMQS  360
RFSTNTHQIQ SSIEQPKNDD FQPQVLQLIG NSTNEKSIPF SLASFELLNN YGRLIKKSSE  420
ENLSINNALS CETRASEEVN NQQFHLARKL TSRNPVQRLS FYIAKALEER IDRATGRYTC  480
TDEDRHLKYI KSMASGTNSA FLICHQLLPF SQVMQFAGVQ TILENVRSAK KIHLIDFNIR  540
SGIQWTVMMQ ALAEKSEIEL LKITAVGSTE KEKFEVTGNT LHSFATSLGL SFSFDIVVLS  600
DMKDFKKESV NIEADETLAV YCNTVLRTMI PKPDYLENLM KVVRSIGPTV IVIGEVEANH  660
NSPSFLNRFI ETLFFYGGFF DCFEDCMDRD SPCRRTIEGL YFGEGIRNIV AAEGKERFTR  720
NVKLEVWRAF FSRFGMVEEE FSESAWYQAN LILKQFAQGI MEDSADIQNF YTNYGFYQEY  780
AVNPQVQEMN KQQEEMNVYA VTPHVQTGSH VDKTPFLSLA PFELLRNNPS RCKNTEGDKV  840
RDMDNTTNAY QKLSAMQIMR LAGERFIQFS SNKSININNL LHPYGSALSN LSQEDNQDVE  900
LAQILLAAAE KVLTNNMTAQ GKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-36	425	753	5	340	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019263178.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A3Q7EHN3	0.0	A0A3Q7EHN3_SOLLC; Uncharacterized protein
STRING	Solyc01g079370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4694	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	4e-37	RGA-like 1