PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04003g05003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 360aa MW: 39889.6 Da PI: 5.7656

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04003g05003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	109	148	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Niben101Scf04003g05003.1 109 RRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 148 8****************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.751	98	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.4E-15	105	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.04E-13	106	152	No hit	No description
SuperFamily	SSF47459	2.22E-15	109	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	109	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	109	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MANNNIYHHN ASSSFSLTEP DPEPDDISVF LRHILHPSSN FMTHEMQYSS LLPHLLPKNQ 60 HGELSSSGGG IFSPSYGAYN VPASVANVSS SSVGTMDNDA DDYECESERR RSRINEKMKA 120 LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQVLTMRNGL SMYPLGLPRD QVSQLRMLSE 180 ENGYTNAKAA GALHVNQDTW LNPIFSPSEN RTETKLTPVV TMSNVNHSNN AFESDSSINV 240 NLDPFQLSRS TTKEILREDW LPLHEMNERP SKTVSIGENL ASSVPFGASD LKRNTLEACL 300 LPYQFGALGE TNMDCDQLLA PRLYRNPSSI ISHGGRTLSK PNAVTSEILV ASSCWTLSKK

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MANNNIYHHN ASSSFSLTEP DPEPDDISVF LRHILHPSSN FMTHEMQYSS LLPHLLPKNQ  60
HGELSSSGGG IFSPSYGAYN VPASVANVSS SSVGTMDNDA DDYECESERR RSRINEKMKA  120
LQNLIPNSNK TDKASMLDEA IEYLKQLQLQ VQVLTMRNGL SMYPLGLPRD QVSQLRMLSE  180
ENGYTNAKAA GALHVNQDTW LNPIFSPSEN RTETKLTPVV TMSNVNHSNN AFESDSSINV  240
NLDPFQLSRS TTKEILREDW LPLHEMNERP SKTVSIGENL ASSVPFGASD LKRNTLEACL  300
LPYQFGALGE TNMDCDQLLA PRLYRNPSSI ISHGGRTLSK PNAVTSEILV ASSCWTLSKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607890.1	0.0	PREDICTED: transcription factor SPATULA
Refseq	XP_016487135.1	0.0	PREDICTED: transcription factor SPATULA-like
TrEMBL	A0A1S4BDY0	0.0	A0A1S4BDY0_TOBAC; transcription factor SPATULA-like
STRING	XP_009607890.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9850	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-21	bHLH family protein