PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04010g01007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 407aa MW: 46330.4 Da PI: 7.4475

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04010g01007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	432.4	3.6e-132	33	407	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklf 84 ++lL++cAe +s +d+++a++lL+ ls+ +sp gd+++Rl++ ft+AL+ rl+r s+ + l+ps+ e++ s+ +++ + Niben101Scf04010g01007.1 33 RQLLISCAELISRSDFSAANRLLTILSTSSSPFGDSTERLVHQFTRALSLRLNRYISSATNFLAPSDVVETSndSALLQSSYLSL 117 89***************************************************999999999888766554225555555666 PP GRAS 85 sevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168 ++v+P+++fs+ltaNqaIlea++ + +++Hi+Dfdi++G+QWp+L+qaLa+R +ppslRiTg g+ + ++l++tg+rLakf Niben101Scf04010g01007.1 118 NQVTPFIRFSQLTANQAILEAINDNqQAIHIVDFDINHGVQWPPLMQALADR-YPPPSLRITGTGN----DLDTLRRTGDRLAKF 197 ********************998799*******************9.999******....*********** PP GRAS 169 Aeelgvpfefnvl..vakrledlel...eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 A++lg++f+f++l + ++ +d ++ +++ + p+E+la+n+v+ lhrll+++ +l+ +L+ +ks++Pkvv+++e+ea+h Niben101Scf04010g01007.1 198 AHSLGLRFQFHPLliTNNNDNDHDPsiiSSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRIKSMNPKVVTLAEREANH 278 ********96433355555551115556777************99999999....****************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 n++ Fl+rf+eal+yy+a+fdslea+lp+ s+er++vE++++grei ++va+eg +rrerhe++++W+ +l+++GF++v+ls +a Niben101Scf04010g01007.1 279 NHPLFLQRFVEALDYYAAVFDSLEATLPPSSRERMTVEQVWFGREIIDIVAAEGYKRRERHERFRSWEVMLRSCGFSNVALSPFA 363 ********************************************************************************* PP GRAS 334 akqaklllrkvk.sdgyrve..eesgslvlgWkdrpLvsvSaWr 374 +qaklllr ++ s+gy++ + s+s++lgW+++pL+s+S+Wr Niben101Scf04010g01007.1 364 LSQAKLLLRLHYpSEGYQLSfsSTSNSFFLGWQNQPLFSISSWR 407 ***************9556699***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.432	6	384	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-129	33	407	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MLGSFGSSSQ SHDEETDDQR RRLSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST 60 SSSPFGDSTE RLVHQFTRAL SLRLNRYISS ATNFLAPSDV VETSNDSALL QSSYLSLNQV 120 TPFIRFSQLT ANQAILEAIN DNQQAIHIVD FDINHGVQWP PLMQALADRY PPPSLRITGT 180 GNDLDTLRRT GDRLAKFAHS LGLRFQFHPL LITNNNDNDH DPSIISSIVL LPDETLAINC 240 VFYLHRLLKD REKLRIFLHR IKSMNPKVVT LAEREANHNH PLFLQRFVEA LDYYAAVFDS 300 LEATLPPSSR ERMTVEQVWF GREIIDIVAA EGYKRRERHE RFRSWEVMLR SCGFSNVALS 360 PFALSQAKLL LRLHYPSEGY QLSFSSTSNS FFLGWQNQPL FSISSWR

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MLGSFGSSSQ SHDEETDDQR RRLSSTSPAI QIRQLLISCA ELISRSDFSA ANRLLTILST  60
SSSPFGDSTE RLVHQFTRAL SLRLNRYISS ATNFLAPSDV VETSNDSALL QSSYLSLNQV  120
TPFIRFSQLT ANQAILEAIN DNQQAIHIVD FDINHGVQWP PLMQALADRY PPPSLRITGT  180
GNDLDTLRRT GDRLAKFAHS LGLRFQFHPL LITNNNDNDH DPSIISSIVL LPDETLAINC  240
VFYLHRLLKD REKLRIFLHR IKSMNPKVVT LAEREANHNH PLFLQRFVEA LDYYAAVFDS  300
LEATLPPSSR ERMTVEQVWF GREIIDIVAA EGYKRRERHE RFRSWEVMLR SCGFSNVALS  360
PFALSQAKLL LRLHYPSEGY QLSFSSTSNS FFLGWQNQPL FSISSWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-63	39	406	26	378	Protein SCARECROW
5b3h_A	3e-63	39	406	25	377	Protein SCARECROW
5b3h_D	3e-63	39	406	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009765072.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-130	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1S3XTB6	0.0	A0A1S3XTB6_TOBAC; scarecrow-like protein 18
TrEMBL	A0A1U7VAL7	0.0	A0A1U7VAL7_NICSY; scarecrow-like protein 18
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-128	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]