PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04011g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 563aa    MW: 61606.9 Da    PI: 6.9795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04011g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31312370259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Niben101Scf04011g05006.1 312 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDKSILITTYEGNHNHP 370
                               7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-34296372IPR003657WRKY domain
SuperFamilySSF1182905.75E-28304372IPR003657WRKY domain
PROSITE profilePS5081129.838306372IPR003657WRKY domain
SMARTSM007742.0E-37311371IPR003657WRKY domain
PfamPF031064.4E-27313370IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MANGSGLFFD PDPTALFLQY LSSKDHHFFY KLLKLEPFLS SNNNIMESPT KNMSSPPPTT  60
IQFPVNLIDG HDQKRPVLDE MDFFAAKEDG KCKEDGKEFN KPLELDFNVN TGLQLLTANT  120
SSDQSIVEDG LSPASSEDRR TKTELAVLQA ELERMNGENR HLRDMLNQVT SNCSSLQIQM  180
TMIKQKQHDH IEQDDKGEEI KQKYHQRSQM RPRQFMDLGL LAGEPSLSSS EGRRSWEQSR  240
SPPMNIVESG SSDREDSPEK SLSCWAPNKV PRVVGNESKS REDSTTVDQA TEATIRKARV  300
SVRARSEAPM ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA AGCPVRKQVQ RCAEDKSILI  360
TTYEGNHNHP LPPAAAAMAS TTSSAARMLL SGSMPSADGL MSSNILARTL LPCSSSMATI  420
SASAPFPTIT LDLTHTSNHS QFKGPSNQFQ FPFQNSPTSP IALLPQIFGQ ALYNQSKFSG  480
LQMSQNLSTL PSIGDTVNAL TVDPNFAAAL AAAVTSLIGN SHHSNNATNN NTAAATTPSN  540
NNETINSSNG INKVNSSSTS PAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22298374176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616884.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-135WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A1S4CZL20.0A0A1S4CZL2_TOBAC; probable WRKY transcription factor 31
STRINGXP_009616884.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9452492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-124WRKY family protein