PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04040g08009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 176aa MW: 20156.4 Da PI: 5.6847

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04040g08009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.6	7e-30	102	160	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 l+Dgy+WrKYG+K+vk+s++pr+YYrC +gCpvkk+ver++ed ++v++tYeg Hnh+ Niben101Scf04040g08009.1 102 LNDGYKWRKYGKKMVKDSPNPRNYYRCPVEGCPVKKRVERDKEDCRYVITTYEGVHNHQ 160 58********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.9E-31	88	161	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-27	95	160	IPR003657	WRKY domain
PROSITE profile	PS50811	29.723	97	162	IPR003657	WRKY domain
SMART	SM00774	3.1E-32	102	161	IPR003657	WRKY domain
Pfam	PF03106	1.2E-22	103	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAANNPSANM SYGSFRSLDS PDSDFSNQLI NFELSDIFEL DNWPVHDDPT SVVSDPSQYS 60 NYAANEVVAT ERSRSYHVGS SSERKEVKDK VAFKTLSQIE ILNDGYKWRK YGKKMVKDSP 120 NPRNYYRCPV EGCPVKKRVE RDKEDCRYVI TTYEGVHNHQ ALPTDMVIFS VETYCA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	9e-25	90	163	2	75	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257931.1	1e-110	PREDICTED: probable WRKY transcription factor 50
TrEMBL	A0A1J6I5U1	1e-108	A0A1J6I5U1_NICAT; Putative wrky transcription factor 50
STRING	XP_009789246.1	1e-109	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2124	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	5e-40	WRKY DNA-binding protein 51