PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04053g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 217aa    MW: 24467.1 Da    PI: 10.2408
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04053g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.62.5e-211663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ie k   qvtfskRr g++KKA+EL++LC++e+a+i+fs+  k+  +
  Niben101Scf04053g00001.1 16 KIEVKNHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPARKVSSF 63
                              58888899*********************************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.156767IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-29766IPR002100Transcription factor, MADS-box
CDDcd002651.29E-31876No hitNo description
SuperFamilySSF554551.83E-26889IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-16929IPR002100Transcription factor, MADS-box
PfamPF003195.5E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MAKKPNIGRQ KIKIAKIEVK NHLQVTFSKR RSGLFKKASE LCTLCGVEIA IIVFSPARKV  60
SSFGHPNVES IIDRFLSRNY NPISNSSLHL VEAHRNASVR ELNLQLTQIV AEVEVEKKRG  120
ESFDQMRKNS QSQYWWEAPI SKVGLHELEQ LKDSMEVLKK NVTNQASKFM VETANSSSYF  180
GVNGTGIFDN YDIKPARNMV GRVPILSCHL TSYSGPN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448849.11e-136PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S3Y9T41e-135A0A1S3Y9T4_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009761267.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-58AGAMOUS-like 62