PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04053g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21113.1 Da    PI: 10.1138
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04053g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.31.3e-201663249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+f +  k y y
  Niben101Scf04053g00007.1 16 KIENQNNRQVTFSKRRNGVFKKANELAVMTGAEVGIIVFPPGSKPYSY 63
                              79*************************************887776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.507767IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-27766IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-25877IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-17929IPR002100Transcription factor, MADS-box
PfamPF003194.0E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-172944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-174465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSTRLIKGRK GVRLAKIENQ NNRQVTFSKR RNGVFKKANE LAVMTGAEVG IIVFPPGSKP  60
YSYGHPNVDE TIDKYVGEEK PLSPSSPGID DKYVQMFRKA NSMTLNSQLN TLQDQLDFAL  120
NLKSKLKEKN KNLESQQEWF RGPIEKMNYT EASMLKEGLE DLLLKVKKYG TERGYGYENG  180
KWKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A5e-15881174MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B5e-15881174MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801878.11e-129PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7YFG21e-127A0A1U7YFG2_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009801878.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29AGAMOUS-like 62