PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04054g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ZF-HD

Protein Properties

Length: 227aa MW: 25826.2 Da PI: 8.011

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04054g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.5	3.2e-33	48	103	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +YkeClkNhA+s+GghavDGCgEfmp+ ge+g+ +alkCaAC+CHRnFHR+e++ Niben101Scf04054g01005.1 48 KPKYKECLKNHAVSIGGHAVDGCGEFMPA-GEDGSLDALKCAACNCHRNFHRKETQI 103 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-22	50	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.5E-31	50	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.6E-30	50	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.893	51	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	3.4E-28	145	219	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.43E-18	151	218	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.7E-25	157	213	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEFETQEDQK EISTNYNSVL EISNSTNEPK MPSNSDELII DAPLQMRKPK YKECLKNHAV 60 SIGGHAVDGC GEFMPAGEDG SLDALKCAAC NCHRNFHRKE TQIHHLPYYR TPPCGYFQQV 120 MPQQRPLALP STSGGGGGGG YREDQEEMCN PNNSGTKKRF RTRFNQEQKE KMLELAEKLG 180 WRIQRQDEGV VQQLCNEIGI KRHVFKVWMH NNKLTLGKKT LIQSTNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	6e-22	156	213	16	73	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009802158.1	1e-158	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Refseq	XP_016462880.1	1e-158	PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
Swissprot	A2Z259	5e-66	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	6e-66	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A1S3ZEH4	1e-156	A0A1S3ZEH4_TOBAC; zinc-finger homeodomain protein 2-like isoform X2
TrEMBL	A0A1U7YG84	1e-156	A0A1U7YG84_NICSY; zinc-finger homeodomain protein 2-like isoform X2
STRING	XP_009802157.1	1e-155	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA518	24	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-68	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]