PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04068g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 539aa MW: 57750.5 Da PI: 7.5984

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04068g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.8	5.4e-40	148	253	3	114
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLl qa+pai+++tgt++++a+++ + s++ss+s+ s Niben101Scf04068g00003.1 148 PPKKQTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLHQAEPAIIAATGTGTIPANFStLNISHRSSGSTLS 232 56899***************************************************************99966666666666333 PP TCP 87 sgkaaksaakskksqksaasalnlakes 114 ++ +sk++++s ++al+la+ + Niben101Scf04068g00003.1 233 AP-------PSKSAPHSFHNALALAAAH 253 33.......4444444444444444433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.9E-38	152	248	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.791	153	207	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MELSDLQNNN TNSTSKQNNN TTSTTNTAPS QPLHHQHQHQ YQLLSHHFQQ QHGRSSVPFM 60 TSISIQPSAP PGLTNASPTP TAATSASPST SSPTPPSKQQ PPHLVDASLA IATRSESLID 120 SNKKSQPQQQ QLAIQQTQPV QQQLQTQPPK KQTKDRHTKV DGRGRRIRMP AACAARVFQL 180 TRELGHKSDG ETIEWLLHQA EPAIIAATGT GTIPANFSTL NISHRSSGST LSAPPSKSAP 240 HSFHNALALA AAHHPSHPFE EGFSHMLGFH QNPHLLTANP IAESIQGGGG GVSSGDGGGG 300 QEGTENYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ FKGNSSQLPK PSQEAVAGPS 360 AASMLRHTNM MPATGLWAVA PPPTSGTTGS PFWMLPVNAS GSGQTLSAPM ASTSGTTTLE 420 SQMWPFPMGS SNTMQAPLHF MPRFNIPTNL EFQSGRGNPL QLGSMLMQQQ QHQQQPSQHL 480 GLGMSESNLG MLAALNAYSR SGLNMNSDHQ SHSLEHHQQH QQHQPQPADS EDDDPNNSQ

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MELSDLQNNN TNSTSKQNNN TTSTTNTAPS QPLHHQHQHQ YQLLSHHFQQ QHGRSSVPFM  60
TSISIQPSAP PGLTNASPTP TAATSASPST SSPTPPSKQQ PPHLVDASLA IATRSESLID  120
SNKKSQPQQQ QLAIQQTQPV QQQLQTQPPK KQTKDRHTKV DGRGRRIRMP AACAARVFQL  180
TRELGHKSDG ETIEWLLHQA EPAIIAATGT GTIPANFSTL NISHRSSGST LSAPPSKSAP  240
HSFHNALALA AAHHPSHPFE EGFSHMLGFH QNPHLLTANP IAESIQGGGG GVSSGDGGGG  300
QEGTENYLRK RYREDLFKEE GSSNPQGEAS GGSSSPSNKQ FKGNSSQLPK PSQEAVAGPS  360
AASMLRHTNM MPATGLWAVA PPPTSGTTGS PFWMLPVNAS GSGQTLSAPM ASTSGTTTLE  420
SQMWPFPMGS SNTMQAPLHF MPRFNIPTNL EFQSGRGNPL QLGSMLMQQQ QHQQQPSQHL  480
GLGMSESNLG MLAALNAYSR SGLNMNSDHQ SHSLEHHQQH QQHQPQPADS EDDDPNNSQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795828.1	0.0	PREDICTED: transcription factor TCP8-like
TrEMBL	A0A1U7XY29	0.0	A0A1U7XY29_NICSY; transcription factor TCP8-like
STRING	XP_009795828.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11484	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-54	TCP family protein