PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04074g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 719aa    MW: 75921 Da    PI: 10.6383
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04074g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.87.9e-151450642
                              HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                              +  r+ ++ kR++g++KK  ELS+LCd+e+a i++ss
  Niben101Scf04074g00008.1 14 DAERKASYKKRKKGLFKKVLELSTLCDVEIAAIVYSS 50
                              67899******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.339150IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-21396IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MARRKVRLAF IIRDAERKAS YKKRKKGLFK KVLELSTLCD VEIAAIVYSS FHSGAEVWPS  60
HEQVMGTIER FRALPEIEQS RRQVNAEGFT RQRIKKLEDQ LRKMRKENRI KEFTNLLHDL  120
LGGQEVPQNM HPYDLNDLTY VIDQNLQKVY ERMTEEAKKQ GLTFDIPSTG PISPPRGTNF  180
EEPRAPLAPP PVVPTVAPTT MVRPMASVSM VRPFAASSYV PPLPVPPPQF VHPMGLSTAL  240
SPGPPPRMFR PVGLSIWPSA PVSQEIFRPM VAQMVSPMPP MMDSRSWATI VASSPMPPSA  300
APRNRAPRAV SPMPPAVAPR SWAPGVASPM PPATTPSVAS PMPPAAAPIS WAPSVTSPMS  360
PAAAPRNWAP SVASPMPPGA VPTPSVASPM PPGAVPTPSV ASPMPPAAAP ISWAPSVTSP  420
MSPAAAPRNW APSVASPMPP GAVPTPSVAS PMPPGAVPTP SVASPMPPAA APISWAPSVT  480
SPMSPVAAPR NWAPSVASPM PPGAVPTPSV ASPMPPGAVP TPSVASPMPP AAAPISWAPS  540
VTSPMPPAAA PRNWAPSVTS PMPPVAAPRN WAPSVASPMP AAAPTPSVDS PMPPAAAPRS  600
WAPRVASPMP PAVAPRSWAP GVASSMPLQM APAMLPRMDF PIIPVMSPRT SSPMVPSVTP  660
PMANSMNSSV DASMPMNNYQ NYFYGNPQSP PDWEEDALMA FVNGTCNIFD EPNHQNNNF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVRLAFIIRDAERKASYKKRK
22125KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450765.10.0PREDICTED: vegetative cell wall protein gp1-like
TrEMBLA0A1S3YEZ30.0A0A1S3YEZ3_TOBAC; vegetative cell wall protein gp1-like
STRINGXP_009786318.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-33AGAMOUS-like 80