PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04082g07002.1
Common NameHTH, Myb, SANT
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 448aa    MW: 50287.1 Da    PI: 7.1193
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04082g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.6e-16118163147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Niben101Scf04082g07002.1 118 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 163
                               899*****************************.***********996 PP
2Myb_DNA-binding56.18.7e-18170213146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Niben101Scf04082g07002.1 170 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 213
                               678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413113164IPR017930Myb domain
SMARTSM007172.4E-14117166IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-28118211IPR009057Homeodomain-like
PfamPF002491.7E-15118163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-26119171IPR009057Homeodomain-like
CDDcd001679.01E-13121162No hitNo description
PROSITE profilePS5129427.288165219IPR017930Myb domain
SMARTSM007172.1E-14169217IPR001005SANT/Myb domain
PfamPF002492.9E-14170212IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-21172218IPR009057Homeodomain-like
CDDcd001673.98E-11172212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSLSSSTTSS SSCSPMSSTS MGMFFADMNS LSITQKHDNE SIKTRGSWDF QFLNKEAFSQ  60
SLDEAETSEE NNETIDLNAS CFNEEKPITM HSTTIFNSSS SNIGKEITES GQSKLCARGH  120
WRPAEDAKLK ELVAIYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFTEEEEER  180
LMAAHRLYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRK MGQFVYRRTT  240
IEEDSNSSLF VSSSKEVAEV AMKGETQTPT ISVGQNSANP FGCLKINNEG PNGWVVYGPN  300
GSPHMAASVG EAIPSTRTNV PLLSPYSPFC APFETLPGQC GNEEMNILNQ QGRFWERQRE  360
TSNISHNIIS HHHHSLTPSN SLMMMNNMQQ SQYLQFPYSN FSNVTTARAQ IPSQVIVKED  420
RRSSSDNSQC DAIAPPPPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321182187107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456515.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A0D6DR050.0A0A0D6DR05_NICBE; SANT/HTH Myb transcription factor
STRINGXP_009781411.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-76myb domain protein 117