PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04083g01026.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 266aa MW: 31455.5 Da PI: 5.8883

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04083g01026.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.7	1.7e-26	155	204	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++l+++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRkiksl Niben101Scf04083g01026.1 155 DTLELDEIQRYFHVPINKAAKELRVGLTVLKKRCRELNIMRWPHRKIKSL 204 7899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.791	137	226	IPR003035	RWP-RK domain
Pfam	PF02042	9.2E-24	156	204	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MNSHVLTLQN QNDQFDWLYS EHPPPTFGTW QQQDSRILSN GGLFNFEYFD PFQFPDDLQN 60 NNLPLFELKE LEEICEDLGT LDDKLPPFQE DIPFNMTFSP LEECQNVTND QNAVHTQDRN 120 YYDYTVGEIE FSSGTNSKEL IKKRNNNGRH HKKSDTLELD EIQRYFHVPI NKAAKELRVG 180 LTVLKKRCRE LNIMRWPHRK IKSLQTLIDS VKEMGLTSEV EMLEEHQRML EKVPEMELTE 240 RTKKLRQTCF KANYKKRRAA MAAFSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016448453.1	0.0	PREDICTED: protein RKD2-like
TrEMBL	A0A1S3Y910	0.0	A0A1S3Y910_TOBAC; protein RKD2-like
STRING	XP_009589276.1	1e-157	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	6e-42	RWP-RK domain-containing protein