PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04099g08003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 644aa    MW: 70512.9 Da    PI: 4.6137
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04099g08003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-50261541128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lp+G+rF+Ptdeelv++yL+ k++g + ++  vi+evd++k+eP+dLp  + v++++++w+fF++ d+ky++g+r nrat++gyW
  Niben101Scf04099g08003.1  26 LPVGYRFRPTDEELVNHYLRLKINGCDDKV-GVIREVDVCKFEPSDLPdlSVVESKDNDWFFFCPIDRKYQNGQRLNRATERGYW 109
                               799************************999.99**************96448888999*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd+++++kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  Niben101Scf04099g08003.1 110 KATGKDRNIVTKKGAKIGMKKTLVYYIGRAPEGKRTNWVIHEYRA 154
                               *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-5623177IPR003441NAC domain
PROSITE profilePS5100553.15726177IPR003441NAC domain
PfamPF023653.5E-2627153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAVIAGDNTI AGLPVEHLGV PPLNTLPVGY RFRPTDEELV NHYLRLKING CDDKVGVIRE  60
VDVCKFEPSD LPDLSVVESK DNDWFFFCPI DRKYQNGQRL NRATERGYWK ATGKDRNIVT  120
KKGAKIGMKK TLVYYIGRAP EGKRTNWVIH EYRATDKSLD GSQPGQGAFV LCRLFKKNEL  180
KQDENAESSH LDEVQQLVSS PAVGKSPDNE ISDAVAPSPI MESDSGKSNP PKISGGETHG  240
TRLPIDSRDD SCTVDDTEDQ MLDITSVPLD PELETLLEIF CDPSPQHLDW KICSPLHAQL  300
QLEFGSSYLH APVINEMSHD QKDVQFQNGT DAFDINEFFN SVLDSSDELS YEDSGLELRT  360
VQFASNSINT ITRSPVKDFG LCSESKAQVM QAPVGTDLFE PEVLWGNSAK TALMREVNSV  420
ATTVEEAFAA PNVSNDHSIG NLDFLNNDYL GDAALSAGSG GMQVPYLLNV EDSSAYSTVG  480
SDSGFGTGIK LRTRFKQNQP DDKHFGSGMQ GTSPRRIRFQ MKLQAGRAEC RVPVDSDKGG  540
ANYKGLLTVT ESDKFSVEGS STAGATIFSD KTQDTMCKEV KGYGRVAEDL SANVKDTDDF  600
PVDEASTMAA LSSFSSSFYI SKALVAVSVI IVFLGILGIC FKLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-43171823170NO APICAL MERISTEM PROTEIN
1ut4_B6e-43171823170NO APICAL MERISTEM PROTEIN
1ut7_A6e-43171823170NO APICAL MERISTEM PROTEIN
1ut7_B6e-43171823170NO APICAL MERISTEM PROTEIN
4dul_A6e-43171823170NAC domain-containing protein 19
4dul_B6e-43171823170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019254472.10.0PREDICTED: NAC domain-containing protein 14-like
TrEMBLA0A1J6IB690.0A0A1J6IB69_NICAT; Nac domain-containing protein 62
STRINGXP_009760820.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.15e-84NAC domain containing protein 62