PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04117g06008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 315aa    MW: 34095 Da    PI: 6.4403
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04117g06008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1085e-3461115155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Niben101Scf04117g06008.1  61 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 115
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.33758118IPR017930Myb domain
SuperFamilySSF466893.76E-1860115IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-3260116IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-2661116IPR006447Myb domain, plants
PfamPF002491.3E-963114IPR001005SANT/Myb domain
PfamPF143791.4E-21147193IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSFSSGAVSG INDMYQPKSV PGSSLAHNNA AVHIQSLDCD DGSMDPTSGG NTVNNPSLAS  60
KQRLRWTNEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL QKYRLAKYLP  120
DSSFDGKNPD KKESRDMLSS LDGSSGVEIT TALKLQMEVQ KRLHEQLEVQ KQLHLRIEAQ  180
GKYLKKIIEE QQRLSGVLSE VPGSGVTAPP TGDNGPESDN RSDPGTPAPT SESPNVEKHV  240
KAHAPTKSLS VDEPFSLQHE PLTPDSDCPE SSPMESPNGE RSSKKQRVGT NVAFAKDDVA  300
LTHQILESSL SPGYQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2461118158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2461118158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2461118158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2461118158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2461118259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787053.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ9SJW01e-116PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A1U7X8740.0A0A1U7X874_NICSY; myb family transcription factor APL-like
STRINGXP_009787053.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27962451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-118G2-like family protein