PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04117g10020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 322aa MW: 34600.1 Da PI: 8.4797

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04117g10020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.9	4.3e-39	39	165	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ Niben101Scf04117g10020.1 39 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSVRSSGTTISAP 123 899***************************************************************9996666666666633333 PP TCP 89 .........................................k 89 + Niben101Scf04117g10020.1 124 psksaplfihggattmlgfhhqlsstgygqdpdenymkkryR 165 444555666666666666655555555554433333333320 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.071	42	96	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.3E-37	42	189	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEFREPNSKN QGGSTSRSDN QNNNNDNNNN LIISTKVVKK PSKDRHTKVD GRGRRIRMPA 60 LCAARVFQLT KELGHKSEGE TIEWLLQQAE PSIIAATGTG TIPANFSTLN VSVRSSGTTI 120 SAPPSKSAPL FIHGGATTML GFHHQLSSTG YGQDPDENYM KKRYREDTSG ATSPSSAAKP 180 ERTGGQAHEP DQESKPVSSH ASSYISAPAM WAVAPAAGNV GNTFWMVPST SSTMQRIGGF 240 ELSGGSRFNP VQLGSMFLQQ PQPVQQLGLG VSETNLGMLA SMNAYNSRGT GIDLGMNLEQ 300 HQHHNQQQGS DSGDENQKDS QS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009803421.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	9e-69	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1U7YN57	0.0	A0A1U7YN57_NICSY; transcription factor TCP8-like
STRING	XP_009803421.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-55	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]