PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04131g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 120aa    MW: 13637.7 Da    PI: 10.0135
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04131g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.58e-098332752
                       AP2 27 krkrfslgkfgtaeeAakaaiaarkk 52
                              +++r++lg+f tae+Aa+a+++a + 
  Niben101Scf04131g01007.1  8 RKTRIWLGTFETAEDAARAYDEASRL 33
                              259*******************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.194144IPR001471AP2/ERF domain
SMARTSM003802.5E-9250IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-12746IPR016177DNA-binding domain
PfamPF008477.6E-5734IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-19844IPR001471AP2/ERF domain
CDDcd000186.44E-19946No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVYYFACRKT RIWLGTFETA EDAARAYDEA SRLMCGQRAR TNFPYNQNMP QTSSSKLLSA  60
TLTAKLHKCY MASLQMPKTS AQHKIKSSHV NVPKNAPIQE NVAYEMKQQM VAPKQISIDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771670.12e-63PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016497010.12e-63PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW52e-36ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4C7985e-62A0A1S4C798_TOBAC; ethylene-responsive transcription factor ERF003-like
TrEMBLA0A1U7WBR65e-62A0A1U7WBR6_NICSY; ethylene-responsive transcription factor ERF003-like
STRINGXP_009771670.18e-63(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-27ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]