PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04234g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 16897.6 Da PI: 9.9849

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04234g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.3	1.3e-10	12	52	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+ ++k+ ++ +s+ ++ + K A LS+LC++++a+iifs Niben101Scf04234g00003.1 12 KFLKDKRAEKIALSNKQKALSKRAMDLSILCGIDIAIIIFS 52 567899999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.895	4	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-5	6	26	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-12	6	75	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-8	15	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-5	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-5	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MTSQMKSKSE KKFLKDKRAE KIALSNKQKA LSKRAMDLSI LCGIDIAIII FSIVTGPFFF 60 GNPNVESVVR QFSQAKQSFS RRMTHEKTGG GEENDTMKKK KKKTINEEEK GESALQIFEP 120 TTLVRLEKLK QEIDELEKDL AEKIDELQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772696.1	3e-77	PREDICTED: agamous-like MADS-box protein AGL61, partial
TrEMBL	A0A1U7W663	7e-76	A0A1U7W663_NICSY; agamous-like MADS-box protein AGL61
STRING	XP_009772696.1	1e-76	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-10	AGAMOUS-like 61