PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04260g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 223aa    MW: 24246 Da    PI: 9.0705
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04260g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027187208323
                               ETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                               C+ C+++F +   L++H +  H
  Niben101Scf04260g01006.1 187 CKTCNRTFGSETALESHSKAkH 208
                               *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.97185213IPR007087Zinc finger, C2H2
PfamPF139125.3E-6187209IPR007087Zinc finger, C2H2
PROSITE patternPS000280187208IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVVSTSLDTR QLTHMSRRKM KKMKMSLMRK YPLLLPTLVR KIVLPTRQTG KAEAKASAND  60
STSDKQKVKI AEPSKDAKAD DEDDSSDEDD TSEDEEDSEM GEDEDDSDED KSDEETPKKA  120
EPSKKRPADS ATRTPAPDKK AKFATPQKAD GKKGAVHVAT PHPSKQAGKT PGNKSNQTPK  180
SGGSLACKTC NRTFGSETAL ESHSKAKHSA GKSHVFFKDV VSV
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791895.12e-96PREDICTED: histone deacetylase HDT1-like isoform X2
SwissprotQ6V9I63e-38HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A1U7XZF34e-95A0A1U7XZF3_NICSY; histone deacetylase HDT1-like isoform X2
STRINGXP_009791887.14e-74(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.13e-22histone deacetylase 2C
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]