PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04285g03018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 93aa    MW: 10479.8 Da    PI: 8.7887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04285g03018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-0820601454
                              HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                       HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              d+i +  ++L++l+P+ + + +s K+s + +L+++++YI+ L
  Niben101Scf04285g03018.1 20 DQIADLVSKLQQLIPEiC-NRRSDKVSASKVLQETCNYIRTL 60
                              6899999*********66.9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.144660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-82078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-62060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-92080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SSGVSRISDD QIADLVSKLQ QLIPEICNRR SDKVSASKVL QETCNYIRTL  60
HREVDGLSDR LSQLLESTES DSVQASIIRS LLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445296.11e-44PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-39PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1S3XZC43e-43A0A1S3XZC4_TOBAC; transcription factor PRE6-like
STRINGXP_009777244.18e-44(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.17e-37bHLH family protein