PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04287g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 483aa    MW: 54159.4 Da    PI: 6.6706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04287g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.1e-14306349755
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                 Er+RR+ri+++++ Lr l+P+ +      K++K++iL  A++YI++Lq
  Niben101Scf04287g02001.1 306 VTERKRRNRIKDGLFALRALVPNiS------KMDKVAILGDAIDYINELQ 349
                               57*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-188159IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.83E-14297353No hitNo description
PROSITE profilePS5088815.605299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17301366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-15305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-18306366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-11307349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MERALEWLRP LVDSNNWEYC VVWKLGDDPS RFIEWIGCCC SGAKGVDVNM KKENGGQLTF  60
TTLCRDSQIQ HPIRTKACEA LAYFPLSISL YSGIQGEVVT SNEPKWINHT EVSNSNLSYY  120
PWQERKGTLV LIPVAGGLVE LYNSKLIYKD QKTIDFIINR FKLGSEKANS STAKRKDQPL  180
DSFPFKKFRF CAPPLQYTSF PSSAPLISQV SESSANPSIQ RSPTGSIPSN ELALCHSTSD  240
HLSRNIPLSQ SGDGYFEHTE LQCSGNLSRM EGTVFPWNQE NYIIAGDVYT MGKKKQRGPY  300
QSKNLVTERK RRNRIKDGLF ALRALVPNIS KMDKVAILGD AIDYINELQE KVKLYQAELN  360
EIAAEASNNE SSEFVLSDMS EMSKVTGPTN EKTQISTEKT RFEGQVEVNL IGAKEFLLKV  420
FGSRKPGGFT QLLEAMNSLG LEVVNTNFNT SGEEMLSIFI ARANEDRVFE AQQLRSSLIE  480
LIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292311KKKQRGPYQSKNLVTERKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768126.10.0PREDICTED: transcription factor bHLH90 isoform X2
TrEMBLA0A1U7VT590.0A0A1U7VT59_NICSY; transcription factor bHLH90 isoform X2
STRINGXP_009768125.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-73bHLH family protein