PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04287g04009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 189aa MW: 21341.5 Da PI: 7.6948

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04287g04009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	199.6	1.3e-61	6	167	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 ++f+ + +CyvqC++C+til+vsvP +sl k+vtvrCGhCts+lsv l+k+s + hl sl+++ +++l+v++e+++ n Niben101Scf04287g04009.1 6 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKIVTVRCGHCTSILSVYLMKTSLV---PLHLFASLNQSEQQKLEVDKEDIDAN 87 789999*********************97369***********9998754...446677888889999999****** PP YABBY 86 vekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 +++ +s+ + v+s+ +e++ e+v v++ v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ Niben101Scf04287g04009.1 88 KKSVDSEISFVASSD-EEDQIENVVPVYQvVNKPPEKRQRAPSAYNCFIKEEIKRLKTIYPNMTHKQAFSTAAKNWAHFPP 167 99999999999988.555555555577769***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.3E-57	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-8	115	169	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.8E-5	118	169	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSALNHLFEL QDTICYVQCG YCTTILLVSV PCSSLCNKIV TVRCGHCTSI LSVYLMKTSL 60 VPLHLFASLN QSEQQKLEVD KEDIDANKKS VDSEISFVAS SDEEDQIENV VPVYQVVNKP 120 PEKRQRAPSA YNCFIKEEIK RLKTIYPNMT HKQAFSTAAK NWAHFPPSQH RGDRESCSLG 180 DRKMPKVLS

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019228973.1	1e-138	PREDICTED: axial regulator YABBY 4 isoform X3
Swissprot	Q9LDT3	5e-64	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S4AHM5	1e-136	A0A1S4AHM5_TOBAC; axial regulator YABBY 4-like isoform X1
TrEMBL	A0A1U7Y8J2	1e-136	A0A1U7Y8J2_NICSY; axial regulator YABBY 4 isoform X1
STRING	XP_009799428.1	1e-137	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-66	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]