PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04296g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 271aa    MW: 31961.8 Da    PI: 6.0917
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04296g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.32.5e-22121393128
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               +G rFhPtd e++ ++Lk+ ++g++++ e  +++++iy    Pw++  +  ++eek  yfF++ +k++++ +r +r+ ++g+Wka
  Niben101Scf04296g00012.1  12 MGERFHPTDGEMI-NFLKRFLKGETFPSEYPFQHAHIYGDrPPWEIFgADSSSEEKVRYFFTQLKKHKSEHTRVRRTCTNGTWKA 95 
                               699**********.9*************778******986478***745656666777******************9999***** PP

                       NAM  86 tgkdkevlskkgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                               +    ++++ kg+++g ++ + f  + ++++ ++  W+m+ey +
  Niben101Scf04296g00012.1  96 QTGIVPIKNGKGTVIGFRRNFKFQcRSSKEREHNKIWLMKEYYV 139
                               9999*****9*************9666777778999******75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.20610162IPR003441NAC domain
SuperFamilySSF1019412.35E-2411161IPR003441NAC domain
PfamPF023652.7E-1313138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSTVPAARRR IMGERFHPTD GEMINFLKRF LKGETFPSEY PFQHAHIYGD RPPWEIFGAD  60
SSSEEKVRYF FTQLKKHKSE HTRVRRTCTN GTWKAQTGIV PIKNGKGTVI GFRRNFKFQC  120
RSSKEREHNK IWLMKEYYVG DDFFRENNIL KEDIVVCQIK KNIREKKVKD DAVFMDEQEL  180
AQIIEDMFHE LDEYNSTTQP ATVCQGNETH NEFIDNTMLH AEYAPDDYLT VEIEQGHGTD  240
HQTNNSEFWE TLNEILKGVN IDVPDDWFHN L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264488.11e-176PREDICTED: NAC domain-containing protein 62-like
TrEMBLA0A314L5J41e-174A0A314L5J4_NICAT; Nac domain-containing protein 78
STRINGXP_009617292.11e-158(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.18e-11NAC domain containing protein 2