PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04323g01009.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 295aa MW: 33836.9 Da PI: 7.9422

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04323g01009.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.5	3.1e-50	30	155	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWka 85 pGfrFhPtdeelv +yL +kve++++ l + ike+diyk++PwdLp+ +++e+ewy+++kr +ky+++ r+nr ++ sg+Wka Niben101Scf04323g01009.1 30 LPGFRFHPTDEELVGFYLPRKVEKRPIAL-QLIKEMDIYKYDPWDLPQGSNKGENEWYYYCKRGRKYKNSVRPNRvTAGSGFWKA 113 59***********************99.89***********98889999****************5556** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+++s kge++glkk+Lv+y+g+a kg+kt+W+mhe+rl Niben101Scf04323g01009.1 114 TGTDKPIYS-KGEVIGLKKSLVYYRGSAGKGTKTEWMMHEFRL 155 *****.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.599	29	182	IPR003441	NAC domain
SuperFamily	SSF101941	1.19E-54	29	182	IPR003441	NAC domain
Pfam	PF02365	6.3E-24	31	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGVEKIECSI VTNNNDKKLE AEEDDEDVQL PGFRFHPTDE ELVGFYLPRK VEKRPIALQL 60 IKEMDIYKYD PWDLPQGSNK GENEWYYYCK RGRKYKNSVR PNRVTAGSGF WKATGTDKPI 120 YSKGEVIGLK KSLVYYRGSA GKGTKTEWMM HEFRLSNNRH LHAANTIAQE AEAWTLCRVL 180 KRNGSYRKFI PDWKEVAASK KRNAVPKICN NYNIDSSNNS QFYISFSTPR VSDIHAENKQ 240 LLNVGSGSIN DETMISTVAA AASNSNTPLG FNEWLDNENW DELRSIFDLS FDPYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-52	22	188	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-52	22	188	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-52	22	188	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-52	22	188	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-52	22	188	10	174	NAC domain-containing protein 19
3swm_B	5e-52	22	188	10	174	NAC domain-containing protein 19
3swm_C	5e-52	22	188	10	174	NAC domain-containing protein 19
3swm_D	5e-52	22	188	10	174	NAC domain-containing protein 19
3swp_A	5e-52	22	188	10	174	NAC domain-containing protein 19
3swp_B	5e-52	22	188	10	174	NAC domain-containing protein 19
3swp_C	5e-52	22	188	10	174	NAC domain-containing protein 19
3swp_D	5e-52	22	188	10	174	NAC domain-containing protein 19
4dul_A	5e-52	22	188	7	171	NAC domain-containing protein 19
4dul_B	5e-52	22	188	7	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019238964.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
TrEMBL	A0A1J6IMQ3	0.0	A0A1J6IMQ3_NICAT; Transcription factor jungbrunnen 1
STRING	XP_009767292.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-77	NAC domain containing protein 42