PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04323g04020.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YA

Protein Properties

Length: 232aa MW: 25851.9 Da PI: 7.0774

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04323g04020.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.3	1.1e-32	141	197	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF Niben101Scf04323g04020.1 141 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 197 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	3.2E-35	139	200	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.593	140	200	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-27	142	197	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.7E-23	143	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	145	165	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.7E-23	174	197	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MYEKFMYEVF VELFKFSIAC EDSVTSSVMT SSLHYHSGGS ENELPEKQSE AHSESSSPAT 60 GMSVPGTVTP NMHYVMPAQH GNENAMAQTA YPYPDPYYRS IFAPYDAQPY PTQPYPAQPM 120 VHVQLMGIQQ AVVPLPSDAI DEPVFVNAKQ YHGILRRRQS RAKAESEKKL LKARKPYLHE 180 SRHLHALKRA RGCGGRFTAK KTDNQPKEGE SGDNSQVNIN LESGKNEVAS AD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-20	140	206	1	67	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227567.1	1e-143	PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	7e-58	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S4BG11	1e-141	A0A1S4BG11_TOBAC; nuclear transcription factor Y subunit A-7-like isoform X4
TrEMBL	A0A1U7UUH3	1e-141	A0A1U7UUH3_NICSY; nuclear transcription factor Y subunit A-7-like isoform X4
STRING	XP_009759697.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	7e-47	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]