PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04366g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 340aa    MW: 37695.4 Da    PI: 9.9589
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04366g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.13e-42902152130
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.ssssaseceaesssssasns 85 
                               + +kdrhski T++g RdRRvRls+ +a++fFdLqd+LGfdk+skt++WL++++k ai elt++ + +++    +ess  ++s+s
  Niben101Scf04366g00007.1  90 PMRKDRHSKILTSQGHRDRRVRLSIGVARKFFDLQDMLGFDKPSKTLDWLFTNSKLAIEELTSQmN-TTS---PNESSAAKKSTS 170
                               579*************************************************************52.333...234455555555 PP

                       TCP  86 ssgkaaksaakskksqksaasalnlakesrakarararertrekm 130
                                +++++++    + +q+++a  + + +esrakarararert +k 
  Niben101Scf04366g00007.1 171 AINSECEDVFLARAKQEEEAILNLVVRESRAKARARARERTIKKV 215
                               666777777777777777775555566**************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136934.52792150IPR017887Transcription factor TCP subgroup
PfamPF036341.8E-3592215IPR005333Transcription factor, TCP
PROSITE profilePS5137010.869197214IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MFPSGNSSGN PILQFSIPSF HSSNSSFLGL NGNQILLHQH QDQLSTHYLA ANNGHLIDNN  60
SSVMFANNVI HNKSNNQEIS FPLNKMMKKP MRKDRHSKIL TSQGHRDRRV RLSIGVARKF  120
FDLQDMLGFD KPSKTLDWLF TNSKLAIEEL TSQMNTTSPN ESSAAKKSTS AINSECEDVF  180
LARAKQEEEA ILNLVVRESR AKARARARER TIKKVWSQIE AKINSSSVVV KEQTKIDEIK  240
EMIHGSVLVE RKNIKSSSST LGFHHPNLSG TEEAAANSNY NSSSSSTGNW DHDINRTIMN  300
SSLSAVMASI SASSQEVPSV FVYANPSEPL ALDVMARFSA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009793865.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793866.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793867.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_009793868.10.0PREDICTED: transcription factor CYCLOIDEA
RefseqXP_016445375.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_016445376.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1S3XZY90.0A0A1S3XZY9_TOBAC; transcription factor CYCLOIDEA-like
TrEMBLA0A1U7XP940.0A0A1U7XP94_NICSY; transcription factor CYCLOIDEA
STRINGXP_009793865.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-31TCP family protein