PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04384g05013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 283aa    MW: 32054.9 Da    PI: 6.2439
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04384g05013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1084.9e-343793359
                    zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59
                               + lkcprC s ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvPvGggr++++
  Niben101Scf04384g05013.1 37 PEPLKCPRCGSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPVGGGRKNKR 93
                              6789***********************************************977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-233393IPR003851Zinc finger, Dof-type
PfamPF027012.1E-303992IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7574094IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104278IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGLSTKLVSF DDHALDNLIQ NSLPEPPSIR RQPTPKPEPL KCPRCGSINT KFCYYNNYNK  60
SQPRHYCKGC KRHWTEGGTL RNVPVGGGRK NKRLRPTDPV DHITKMEHVT LEVNDQRCPL  120
NSTTVPISTI RGNVTTNDEE KKESDILYQT LNFPSTPLPF DRTISNFSKK PFNGNYNDIF  180
AGLKLDGNTH FSFSFDTVPC SLSAQTSYIC NEYMGKFDST VEESTITTVM PITSSSDLLS  240
QPWQIAETSN VTENMLSYWN WNEIDTLSTA DLNIAWDDLE IKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780420.10.0PREDICTED: dof zinc finger protein PBF-like
TrEMBLA0A1U7X1S10.0A0A1U7X1S1_NICSY; dof zinc finger protein PBF-like
STRINGXP_009780420.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61712033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.13e-28DNA binding with one finger 4.7