PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04396g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 73aa    MW: 8039.51 Da    PI: 10.8878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04396g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.66e-171258248
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              +i  ++ r vtfskRr+g++KKA EL  +++ +va ++fs+tgk y+
  Niben101Scf04396g04001.1 12 KITKETSRMVTFSKRRKGLFKKAGELESMTGSRVAAVVFSPTGKPYT 58
                              688999*************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-21362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.282358IPR002100Transcription factor, MADS-box
CDDcd001205.49E-22458No hitNo description
SuperFamilySSF554557.06E-20460IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-15525IPR002100Transcription factor, MADS-box
PfamPF003194.3E-221258IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-152540IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-154061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MGTGKKKIQI EKITKETSRM VTFSKRRKGL FKKAGELESM TGSRVAAVVF SPTGKPYTCG  60
NFLGFKIIPA PEE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796162.16e-36PREDICTED: MADS-box transcription factor 23-like
RefseqXP_019266521.16e-36PREDICTED: MADS-box transcription factor 23-like
SwissprotQ4PSU49e-14AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1U7XVX11e-34A0A1U7XVX1_NICSY; MADS-box transcription factor 23-like
TrEMBLA0A314L0I91e-34A0A314L0I9_NICAT; Uncharacterized protein
STRINGXP_009796162.12e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-12AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]