PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04400g02022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 546aa    MW: 62230.6 Da    PI: 9.4064
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04400g02022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00095480502123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp C+++F++   L  H r+H
  Niben101Scf04400g02022.1 480 HECPFCNRMFKSGQALGGHKRSH 502
                               78******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.78830IPR015880Zinc finger, C2H2-like
PfamPF139120.00111030IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.40899126IPR007087Zinc finger, C2H2
SMARTSM003550.2399121IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-5101123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355230405425IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-6405424IPR007087Zinc finger, C2H2
SMARTSM003550.028480502IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452480502IPR007087Zinc finger, C2H2
PfamPF139126.6E-9480502IPR007087Zinc finger, C2H2
PROSITE patternPS000280482502IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEDQDLKYFC KLCNKRYPCG KSFGGHMRSH VLANSSKLEE KVEPKHKKVQ SWINLGKKNS  60
KRDHKSKYEL GENSGYGLRD NPKKTWRAVD SRSPLPQENV CQQCGKFFRS LKALCGHMAC  120
HSGKDKGSKD DHSWTSENKN IAMDSNSDTE AEEPIMLRSR SKIKRYNKSK SSSFCLVNNR  180
SFSSSVSEID EQDQEEVAKC LMMLSMDSGN WNGVINSVVE SSDNNSVVFE SKSSSVDMKI  240
TRKDSLKYAD NLDGTPRSKK KSDRNLKLNV LNAEVQSENS DSGYFLDEYM NVESDASVDE  300
FHRKYNYQCN MSNKSLGVWC NESRIDEEKG LNRMKKHITD IRNGSTKDYK YNSYGMTSNL  360
VKCESRKRNK DSSYRSGLGN EPFNKKIKLG FKGAEGSKHT QKKKYECFNC KKTFSSYQAL  420
GGHRPCTKTT NAYTELKYET NENSRDADRE TFSNKKPAAH TQDISYNPEK KMKAKKFKGH  480
ECPFCNRMFK SGQALGGHKR SHFLTGSQEN QYQASAFKRE VVDLLDLNLP APVEDVDGEP  540
AFVSSW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791314.10.0PREDICTED: uncharacterized protein LOC104238609
TrEMBLA0A1U7XWK20.0A0A1U7XWK2_NICSY; uncharacterized protein LOC104238609
STRINGXP_009791314.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-41C2H2-like zinc finger protein