PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04410g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 208aa    MW: 24409.9 Da    PI: 9.9596
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04410g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF931.4e-29959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
  Niben101Scf04410g05002.1  9 KRIENKINRQVTFSKRRYGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
                              79***********************************************86 PP
2K-box105.94.7e-35821758100
                     K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                               + ++++   s++ e+akLk+++e +qr+qRh++GedL+sLs+keLq+Le+qL+++lk+ Rs+Kn+l++e+i+elqkk k+lqe+n
  Niben101Scf04410g05002.1  82 AnTDHSSPGSWTVEHAKLKARLEVIQRNQRHYMGEDLNSLSMKELQNLEHQLDSALKHTRSRKNQLMHESISELQKKDKALQEQN 166
                               4466677889*************************************************************************** PP

                     K-box  92 kaLrkklee 100
                               ++L+kk++e
  Niben101Scf04410g05002.1 167 NQLSKKVKE 175
                               ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-32281IPR002100Transcription factor, MADS-box
CDDcd002656.64E-39279No hitNo description
PRINTSPR004046.6E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004046.6E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.5E-2986173IPR002487Transcription factor, K-box
PROSITE profilePS5129716.56189179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRYGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD  60
SCMERILEKY ERYSYAERQL VANTDHSSPG SWTVEHAKLK ARLEVIQRNQ RHYMGEDLNS  120
LSMKELQNLE HQLDSALKHT RSRKNQLMHE SISELQKKDK ALQEQNNQLS KKVKERKKEL  180
AQQNQWEQQK ELNSPNLGSV YIYCSICL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-23174173Myocyte-specific enhancer factor 2B
1tqe_Q2e-23174173Myocyte-specific enhancer factor 2B
1tqe_R2e-23174173Myocyte-specific enhancer factor 2B
1tqe_S2e-23174173Myocyte-specific enhancer factor 2B
6c9l_A2e-23174173Myocyte-specific enhancer factor 2B
6c9l_B2e-23174173Myocyte-specific enhancer factor 2B
6c9l_C2e-23174173Myocyte-specific enhancer factor 2B
6c9l_D2e-23174173Myocyte-specific enhancer factor 2B
6c9l_E2e-23174173Myocyte-specific enhancer factor 2B
6c9l_F2e-23174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236550.11e-124PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-123AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1J6K1311e-123A0A1J6K131_NICAT; Agamous-like mads-box protein agl8
STRINGXP_009792071.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-97AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]