PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04437g04001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 212aa MW: 23201.3 Da PI: 6.2299

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04437g04001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.5	9.4e-43	45	144	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+ Niben101Scf04437g04001.1 45 PCAACKILRRRCAEKCVLAPYFPPNDPVKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQK 129 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+a+la++++e Niben101Scf04437g04001.1 130 QVNELQAQLATAQAE 144 ********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.247	44	145	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-43	45	142	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MEYSSDTKAT VISTSPPSSR SVSPPSSSSC SPNSPPPPPM VVVSPCAACK ILRRRCAEKC 60 VLAPYFPPND PVKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGC 120 AGAICQLQKQ VNELQAQLAT AQAEVVNMQC QQANLMALIC MDMNQSSPQA SPQQHSNLES 180 FTINIPHSFQ NNMSFLDDNN NFGSVWEPLM WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-43	44	152	10	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-43	44	152	10	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009763968.1	1e-123	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016480560.1	1e-123	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-73	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4AVF6	1e-121	A0A1S4AVF6_TOBAC; LOB domain-containing protein 1-like
TrEMBL	A0A1U7VC88	1e-121	A0A1U7VC88_NICSY; LOB domain-containing protein 1-like
STRING	XP_009763968.1	1e-122	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	5e-63	LOB domain-containing protein 1