PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04462g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 249aa    MW: 28504.2 Da    PI: 5.8835
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04462g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP23.11.9e-07153174324
                               SSTT-----TT--HHHHHTT-- CS
                       SBP   3 qvegCeadlseakeyhrrhkvC 24 
                               q++gC+adl++ak+yhrrh+v 
  Niben101Scf04462g01007.1 153 QADGCNADLTHAKRYHRRHRVP 174
                               899*****************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-6149173IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.19E-6152173IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
LIGSEQLGEI MMDYEWETVE ETTQETDQNN LFFDPFVNHH AHFSPIRNHL DQQQQQIQNH  60
QFQTTPNNNH FSSLNNSHTY DVPYSQTQHT SMLYNLPVRP GSIWFYQKAN PSLWVNWVEF  120
CGRAYFASSE DDFVSWLFRR TRAVEAGSVN SRQADGCNAD LTHAKRYHRR HRVPCLSEFD  180
NGEQKLPDLN IQTPAESGAH SSTVTVAISP PRISMDCFWQ RTYQQAAAIA DATTTTSSST  240
TSSLFFSNG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782498.18e-78PREDICTED: squamosa promoter-binding-like protein 8 isoform X1
TrEMBLA0A1U7WV662e-76A0A1U7WV66_NICSY; squamosa promoter-binding-like protein 8 isoform X1
STRINGXP_009782498.13e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48462341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-18squamosa promoter binding protein-like 8