PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04496g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 357aa    MW: 39978.7 Da    PI: 8.407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04496g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.23.2e-53161431128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrFhPtdeelvv+yLkkk+++ +l++  +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka
  Niben101Scf04496g00016.1  16 LPPGFRFHPTDEELVVHYLKKKAASIPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 99 
                               79****************************.88***************988899******************************* PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg+dk+vl++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Niben101Scf04496g00016.1 100 TGTDKPVLTAgGTQKVGVKKALVFYGGKPPKGVKTSWIMHEYRL 143
                               ********9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-659176IPR003441NAC domain
PROSITE profilePS5100561.67316176IPR003441NAC domain
PfamPF023656.6E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MESTDSSSGS HQQPQLPPGF RFHPTDEELV VHYLKKKAAS IPLPVAIIAE VDLYKFDPWE  60
LPAKATFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPVLTAG GTQKVGVKKA  120
LVFYGGKPPK GVKTSWIMHE YRLADNKPNN KPPGCDVANK KSLRLDDWVL CRIYKKNNTQ  180
RPIDHERDDL NDIMGSSIPA TCIPNNSMSM SIFGQPKANS NYTTLLETHD QNIYDQGMQF  240
SSKSSSQLPV NVLTTSPSLL PSKRSLNGLY WNEEAAANDN SQSTKRFLTE NIDNMDDGLS  300
MNVRSDHEQN GSIASLLSQL PQTPSLQQQQ QQQQQILQGS LSDGVFRQPY SGMNWYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-741617815170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009769986.10.0PREDICTED: NAC transcription factor 25
RefseqXP_016484530.10.0PREDICTED: NAC transcription factor 56-like
SwissprotQ9LD441e-116NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A1S4B6F40.0A0A1S4B6F4_TOBAC; NAC transcription factor 56-like
TrEMBLA0A1U7VYE50.0A0A1U7VYE5_NICSY; NAC transcription factor 25
STRINGXP_009769986.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-112NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]