PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04505g02007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 102aa    MW: 11697.4 Da    PI: 10.1848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04505g02007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-102361855
                       AP2 18 eIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              eIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Niben101Scf04505g02007.1  2 EIREPKK---RTRLWLGSFATAEEAAMAYDEAARRLYG 36
                              6889854...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.079144IPR001471AP2/ERF domain
CDDcd000181.43E-19245No hitNo description
Gene3DG3DSA:3.30.730.106.8E-19245IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-12245IPR016177DNA-binding domain
SMARTSM003804.2E-14250IPR001471AP2/ERF domain
PfamPF008477.5E-6736IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MEIREPKKRT RLWLGSFATA EEAAMAYDEA ARRLYGPDAY LNLPHMRANF NPLNKSQKFK  60
WFSSGNFVSS FPNCTTGLLN LSAQPNVHVI HQRLQELKKT EA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804771.12e-67PREDICTED: dehydration-responsive element-binding protein 2F
RefseqXP_016440548.12e-67PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX51e-43DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A1S3XKV14e-66A0A1S3XKV1_TOBAC; dehydration-responsive element-binding protein 2F-like
TrEMBLA0A1U7YS464e-66A0A1U7YS46_NICSY; dehydration-responsive element-binding protein 2F
STRINGXP_009804771.16e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-34ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]