PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04514g01005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 239aa MW: 26811.2 Da PI: 7.5419

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04514g01005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Niben101Scf04514g01005.1 103 FSCNYCQRKFYSSQALGGHQNAH 125 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	28	No hit	No description
SuperFamily	SSF57667	1.52E-6	100	130	No hit	No description
PROSITE profile	PS50157	11.427	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MVTLKRYVHL HPIGGQDALS SSSSSSSCQD ERKYHKQEED HQNATEDIRL REKGNGDGDG 60 HGDESDHRKN NQELNLLERL NTNNSPICDE NDPTSDGAEP RVFSCNYCQR KFYSSQALGG 120 HQNAHKRERT LAKRAGQRPI GHHHLFNFPP TPAAAAAAFG HHPYLQHQNN YNYVSSMSTL 180 PLNGANYHNN SLGIQAHSMI HKATNSSGNW SNRQFIKHQP GGEEEKNSEL QKIDLSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262888.1	1e-136	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A314L7G5	1e-134	A0A314L7G5_NICAT; Zinc finger protein 1
STRING	XP_009593661.1	1e-131	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15739	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-29	zinc-finger protein 1