PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04514g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 119aa    MW: 13918.9 Da    PI: 4.9477
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04514g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly132.12.9e-41110435138
                    Whirly  35 llelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgn 119
                               +l++a+a+++r+ydW++ q+f+l + e++++++l+ k+sceffh p +++++eGkvrk+l+ve lpdGsG f+nlsv+n+l++ +
  Niben101Scf04514g03005.1   1 MLQFAPAAGVRQYDWGRMQVFSLFVIEMGSFINLGEKDSCEFFHYPNKEKGDEGKVRKVLRVELLPDGSGRFFNLSVQNKLINLD 85 
                               89*********************************************************************************** PP

                    Whirly 120 esfsvPvskaefavlrsll 138
                               e++++P ++ efavl  ++
  Niben101Scf04514g03005.1  86 ENIYIPATEEEFAVLVFAF 104
                               ***************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085361.9E-361100IPR013742Plant transcription factor
SuperFamilySSF544477.85E-361106IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.2E-361105IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MLQFAPAAGV RQYDWGRMQV FSLFVIEMGS FINLGEKDSC EFFHYPNKEK GDEGKVRKVL  60
RVELLPDGSG RFFNLSVQNK LINLDENIYI PATEEEFAVL VFAFNRIEVW SPCRRERDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A3e-56110577181p24: plant transcriptional regulator PBF-2
1l3a_B3e-56110577181p24: plant transcriptional regulator PBF-2
1l3a_C3e-56110577181p24: plant transcriptional regulator PBF-2
1l3a_D3e-56110577181p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474450.19e-57PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like
RefseqXP_019257017.11e-56PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL854e-56WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A1J6IDX23e-55A0A1J6IDX2_NICAT; Single-stranded dna-binding protein why1, chloroplastic
TrEMBLA0A1S4ACQ82e-55A0A1S4ACQ8_TOBAC; single-stranded DNA-binding protein WHY1, chloroplastic-like
STRINGXP_009758353.12e-55(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-54ssDNA-binding transcriptional regulator