PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04614g07007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 185aa MW: 21607.4 Da PI: 5.3532

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04614g07007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.6	5e-11	4	41	3	40
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 i+ + +r+ tf k ++ ++KK +ELS+LC+++++ ii Niben101Scf04614g07007.1 4 IQYHKKRKSTFQKKKACLIKKISELSILCNIKACTIIH 41 5567899***************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	11.521	1	40	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.62E-13	1	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0013	1	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-11	4	43	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MELIQYHKKR KSTFQKKKAC LIKKISELSI LCNIKACTII HEGNNCEEIW PNNQNDGSFD 60 PFPEKESRNL AGVVEKKMEN AKGKSEFLKS YRNINQEIWD YPELVDNFNQ KLKSDFDHVN 120 SMGIFYNGQL STDDYEFGNS EYMKIEAEDW LVNNGIIGSS SRMQPMQLNQ LWTGYTDLMP 180 YGYMQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598741.1	4e-78	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A1U7XBH9	1e-73	A0A1U7XBH9_NICSY; agamous-like MADS-box protein AGL17
STRING	XP_009598741.1	1e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6342	12	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.1	2e-10	M-type_MADS family protein