PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04628g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 80aa    MW: 9263.52 Da    PI: 9.7084
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04628g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY36.69e-125676222
                              --SS-EEEEEEE--TT-SS-E CS
                      WRKY  2 dDgynWrKYGqKevkgsefpr 22
                              dDgy+WrKYGqK++k+s++pr
  Niben101Scf04628g00001.1 56 DDGYKWRKYGQKSIKNSPYPR 76
                              8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-114977IPR003657WRKY domain
PROSITE profilePS5081112.2665080IPR003657WRKY domain
SuperFamilySSF1182909.02E-105277IPR003657WRKY domain
SMARTSM007740.00595580IPR003657WRKY domain
PfamPF031062.0E-85677IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MDYIESGLSV TSYGIQSHDV SYARTFGLER GLNLMMSKQE TKYTLRIKTC GNAMADDGYK  60
WRKYGQKSIK NSPYPRYISY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598015.15e-45PREDICTED: probable WRKY transcription factor 49
TrEMBLA0A1S4A1F42e-43A0A1S4A1F4_TOBAC; probable WRKY transcription factor 49
STRINGXP_009598015.12e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120752124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.11e-14WRKY DNA-binding protein 49