PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04653g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 435aa    MW: 48357.4 Da    PI: 7.154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04653g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.3e-178831899
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              +p +fa+  ++   ++++  led+sg++W+v +  + ++g+  +++GW  F +++gLk gDf+vF++++r+ f   v++f +
  Niben101Scf04653g01013.1  8 FPPRFARLVSHL--TNQETYLEDSSGQKWKVGI--CIHKGSLAIREGWHAFSSEHGLKIGDFLVFHYIQRQHF--IVQIFGT 83
                              688888777544..45589**************..999999****************************9999..9999976 PP
2B330.75.4e-103444241697
                               EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  16 lvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                               l lp +  +    g kk e++t+ l+ ++ r W v++    + g+ vl++ W  F  a g+k gD + F++ + se++++v+++
  Niben101Scf04653g01013.1 344 LELPQSWPQ-VltGRKKLEHITIYLQGPDDRPWPVTY--HERAGTKVLASRWALFTAAYGIKPGDECQFQVLNLSERRFKVHIV 424
                               556655553.2467788899*****************..9999999************************66558888899886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.761184IPR003340B3 DNA binding domain
SMARTSM010191.6E-8384IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-19686IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-18786IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-14782IPR003340B3 DNA binding domain
CDDcd100171.23E-16781No hitNo description
SMARTSM010190.24331427IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-9339425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-10342424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-7361423No hitNo description
PROSITE profilePS508638.487364427IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MYLVKHYFPP RFARLVSHLT NQETYLEDSS GQKWKVGICI HKGSLAIREG WHAFSSEHGL  60
KIGDFLVFHY IQRQHFIVQI FGTSGCQKIS FDNGTRTGKK RRRTNCKATS QDELLPETDI  120
NSRKKRNSTP SDTAVPESEM VDHEAVTTTF ASTIDADTGI LEIVPEAEAI SDILQGENGP  180
RNHVSTNSIS QRESSLVDEV PVEMELLSFQ APVHLLDIGI TQTEKVSEPV NDILRLGEKD  240
ENVHNMGLIS STSSAENSGK GSHSVLPSNK GSRCSNQATR DKSNEASHIG KKPKIIEKDG  300
HGFLMAVSGN NKVIKSEPAD SGDTSFPDAG NFSCLLRVDG RNFLELPQSW PQVLTGRKKL  360
EHITIYLQGP DDRPWPVTYH ERAGTKVLAS RWALFTAAYG IKPGDECQFQ VLNLSERRFK  420
VHIVHKLDVT QTSLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019235968.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
TrEMBLA0A1J6K5470.0A0A1J6K547_NICAT; B3 domain-containing protein
STRINGXP_009774954.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-09B3 family protein