PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04655g04019.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 85aa    MW: 9872.19 Da    PI: 9.4697
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04655g04019.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08652347
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                               WT +  +l+ +a + +  +   +W+  a+ +g g++++++k ++ k+
  Niben101Scf04655g04019.1  6 TWTHQQNKLFENALAIYDREtpdRWRNLAKAVG-GKSEEEVKTHYEKL 52
                              7*****************88*************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.067257IPR017884SANT domain
SMARTSM007171.5E-5355IPR001005SANT/Myb domain
SuperFamilySSF466896.01E-11553IPR009057Homeodomain-like
CDDcd001675.25E-6652No hitNo description
PfamPF002493.6E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-4651IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MASNSTWTHQ QNKLFENALA IYDRETPDRW RNLAKAVGGK SEEEVKTHYE KLAEVFEAPM  60
KETAKYIILF RRSLFYMSSG TPNAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-16254658RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009760253.11e-31PREDICTED: protein RADIALIS-like 3
RefseqXP_016460726.11e-31PREDICTED: protein RADIALIS-like 3
RefseqXP_019264431.11e-31PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-20RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3Z8K73e-30A0A1S3Z8K7_TOBAC; protein RADIALIS-like 3
TrEMBLA0A1U7V1I73e-30A0A1U7V1I7_NICSY; protein RADIALIS-like 3
TrEMBLA0A314L5P73e-30A0A314L5P7_NICAT; Protein radialis-like 6
STRINGXP_009760253.14e-31(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-23RAD-like 6