PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04657g03011.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 244aa MW: 27259.6 Da PI: 4.2984

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04657g03011.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.4e-10	169	208	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Niben101Scf04657g03011.1 169 KRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 208 8***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.64E-13	156	212	No hit	No description
SuperFamily	SSF47459	1.7E-12	156	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-12	157	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.85	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.2E-8	165	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-7	169	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MNPLAFMSEG ELNSFGGMYS TDQDADFMSQ LPGNCSIPIS SLLTSYESNN SINFFSQGSS 60 YNGCSSFPFS PLPSHESSCH PSHFRSNMMI RNDSSIIIDR YGMDVEGENI ISSPSLTNYN 120 AMIEVDDFLI NQDVSTDSME SGENMPIEDK VDSPPDSSKK RSRRLLGDKR RERINERLRI 180 LQNLVPNGTK VDISTMLEEA VQYVKFLQLQ IKLLGSDDLW MYAPIAYNGM DIGLDLMNVG 240 TPKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019255469.1	1e-99	PREDICTED: transcription factor bHLH139-like
TrEMBL	A0A1J6HWE3	2e-98	A0A1J6HWE3_NICAT; Transcription factor bhlh84
STRING	XP_009611804.1	1e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA639	22	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14760.1	6e-32	bHLH family protein