PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04657g05006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 339aa    MW: 38444.9 Da    PI: 4.9988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04657g05006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-092172551154
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               +RR+riN+++ +L+ l+P+      +K++ +++Le+Av+Y+k  
  Niben101Scf04657g05006.1 217 KRRERINEKLKTLQNLIPNG-----TKVDISTMLEEAVQYVKFS 255
                               8*****************97.....8**************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.649206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7208261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-6217254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-11217271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-9217260No hitNo description
Gene3DG3DSA:4.10.280.105.3E-11217271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
METVASISGE WSSFSGMYLT EEADFMAHLL GNCSLPNELP STYWTDHEST MNMGGVREVP  60
FYSSNDTNIS MYSGGSGSCF PPRSHESYYS SHSRPILMRN DSSITMEYGP VEGQINPIEA  120
DDFLNRDHVS NDNMEYNESM PDAVLDGNGL QLGRRDYYEQ FPEDKMNSSS ENSKKRSRLH  180
GPAPVPNNKR SAKLEKAVLQ RQNSMISCCS EEDSVNKRRE RINEKLKTLQ NLIPNGTKVD  240
ISTMLEEAVQ YVKFSQLQIK TYYRHHAKLN SLLSNGIIGY SANVTKINCF SHRDQEMDLN  300
VMLFVWDVQL LSSDDQWMYA PIAYNGMDLG LDLRIGSPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233910.11e-174PREDICTED: transcription factor bHLH84-like
TrEMBLA0A1J6KCD21e-173A0A1J6KCD2_NICAT; Transcription factor bhlh85
STRINGXP_009758954.11e-156(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.37e-29bHLH family protein