PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04657g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 309aa    MW: 34739.8 Da    PI: 4.7497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04657g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.4e-082362751155
                               HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               rRR+riN+++ +L+ l+P+      +K++ +++Le+Av ++k Lq
  Niben101Scf04657g06001.1 236 RRRERINERLRTLQNLIPNG-----TKVDISTMLEEAVLFVKFLQ 275
                               9*****************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.379225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7232280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-10234284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-11235290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-6236275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-9236279No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEPVASILGE WSSFGRMCLT DEADFMAQLL GNCSLPNELP CSSNFGVSSA YWTGHESNMN  60
MGGPRKVSVY TSNDTNSSMY IDGSNFLFSP PSHENYYSSH SRPILMRNDS SITVEHGLVD  120
TNNPSEVDDF LNQDVSNDSM EFDENMPEAA LDGKGLQLGR TNYEQFAEDK MDSPSESSKK  180
RSRLHGLEHV PKNKRSAKLE KDLKGGEMDG KNKVVLQRQN STISCCSEDE SNVSHRRRER  240
INERLRTLQN LIPNGTKVDI STMLEEAVLF VKFLQLQIKL LSSDDLWMYS PIAYNGMDIG  300
LDLRIDIPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233912.10.0PREDICTED: transcription factor bHLH139-like
TrEMBLA0A1J6KZP50.0A0A1J6KZP5_NICAT; Transcription factor bhlh84
STRINGXP_009602073.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-35bHLH family protein